Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015942801.1_cds_XP_016486148.1_77013
CDS Infomation

[gene=LOC107806498] [db_xref=GeneID:107806498] [protein=autophagy-related protein 18a-like] [protein_id=XP_016486148.1] [location=complement(join(3710..3800,4638..4764,6817..7015,8093..8947))] [gbkey=CDS]
Sequence

ATGGCCACTGTTTCCCCTCTTCCCCCGCCATTTCAGCACCCAACCACTAATTCAAAGTTT
AACTCACCAATGCTTCAACCTTACTTAGAGCAACTACAAGAACAACACAAACAACAGCTT
CAGCCGCAGCAACAAGATGCTGTTGAGCAGGTAGATAATGAGCCTGAGCAGAGTCCCCTT
ATCCAAAACTGTCCTAATCATGGTTTGATCAATCAGTCAATCTCGACTCTATACCGTGTT
TCGTTCAATCAAAACAGTAGCTGTTTTGCCATTGGCACTGATCGTGGCATTACAGTCTAT
AGCTGTGACCCTTTCAGAAAGATGTTTCAACGGTACTTTGACAATGGAGGTGGTATTGAA
ATTATTGAGATGCTCTTCTGCAGCAACATACTTGTCTTTGTTGGAAGTGGAGATAATCCA
CAATATCCTCGAAACAAGGCCATAATTTGGGATGATCATCGGAGCCGCTGCTTGGGCGAA
CTCTGTTTCCGGTCGGCTGTGCGTAGTGTCCGGCTTCGACGTGACTGCATCGTAGTTATA
CTTGAGCAGAAGATATTTATATATAATTTTGCTGACATGAAGCTCGTCCACCAGATTGAG
ACAATTGTAAACACAAAGGGACTCTGTGAGATTTCACAAGCGACTGGATCACCTGTGCTG
GTGTGCCCTGGATTACGAAATGGTGAAGTTCGTGTTGAGCATTTCACTTCAAAAAGGACT
AAGTTTATTTTTGCGCATGATTCTAAGACTGCATCTTTTGCACTTAGTCATGAGGGGCAT
GTGCTGGCAACAGCAAGTATCAAGGGTACTCTTATCCGGATTTTCAGCACACAGGATGGT
ACGTTATTGCAGGAGGTGCGTAGAGGTGCTGATAGAGCAGAAATTCACAGTGTTTCATTC
TCTCCGACTGCTGAGTGGCTAGCAGTCTCTAGTGACAAAGGCACTGTTCATCTTTTTAGG
ATCAAGCATCTTGGGAATCAGGATAAGACAAATACTCCTCGTAATTCCCGTCTTACTCTG
GCGGCATCAAGTTCACCATTCTCCTTCATCAAAGGAGTGCTTCCAAAATATTTTAGCTCA
GAATGGTCAGTGGCACAATTCCGGTTGCCTGGTGACTCCGAGTATATTGTCACATTTGGT
CACGAAAAGAATACATTGATAATTCTTGGCTTGGATGGAAGCTTTATTAGATGCAAGTTT
GACCCAGCCTCTGGCAAAGAGATGACTCAGTTGGAGATTCACAACTTTCTTAGGTCTGAT
AAGGCCTCGTAA

Peptide Sequence

PEP ID

XP_016486148.1
PEP Infomation

PREDICTED: autophagy-related protein 18a-like [Nicotiana tabacum]
Sequence

MATVSPLPPPFQHPTTNSKFNSPMLQPYLEQLQEQHKQQLQPQQQDAVEQVDNEPEQSPL
IQNCPNHGLINQSISTLYRVSFNQNSSCFAIGTDRGITVYSCDPFRKMFQRYFDNGGGIE
IIEMLFCSNILVFVGSGDNPQYPRNKAIIWDDHRSRCLGELCFRSAVRSVRLRRDCIVVI
LEQKIFIYNFADMKLVHQIETIVNTKGLCEISQATGSPVLVCPGLRNGEVRVEHFTSKRT
KFIFAHDSKTASFALSHEGHVLATASIKGTLIRIFSTQDGTLLQEVRRGADRAEIHSVSF
SPTAEWLAVSSDKGTVHLFRIKHLGNQDKTNTPRNSRLTLAASSSPFSFIKGVLPKYFSS
EWSVAQFRLPGDSEYIVTFGHEKNTLIILGLDGSFIRCKFDPASGKEMTQLEIHNFLRSD
KAS

Transcript Sequence

Gene sequence data has not been registered.